J5_8G4S_001

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUCU*AGCGC*GAGCGAG*CGCGGAG*CGAG

Length

27 nucleotides

Bulged bases

8G4S|1|2|C|421, 8G4S|1|2|G|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G4S|1|2|C|30
8G4S|1|2|U|31
8G4S|1|2|C|32
8G4S|1|2|U|33
*
8G4S|1|2|A|386
8G4S|1|2|G|387
8G4S|1|2|C|388
8G4S|1|2|G|389
8G4S|1|2|C|390
*
8G4S|1|2|G|393
8G4S|1|2|A|394
8G4S|1|2|G|395
8G4S|1|2|C|396
8G4S|1|2|G|397
8G4S|1|2|A|398
8G4S|1|2|G|399
*
8G4S|1|2|C|419
8G4S|1|2|G|420
8G4S|1|2|C|421
8G4S|1|2|G|422
8G4S|1|2|G|423
8G4S|1|2|A|424
8G4S|1|2|G|425
*
8G4S|1|2|C|472
8G4S|1|2|G|473
8G4S|1|2|A|474
8G4S|1|2|G|475

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Ribosomal protein S9

Chain X

SSU ribosomal protein S12P

Chain e

40S ribosomal protein S30