J5_8G5Z_002

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

8G5Z|1|L5|C|2289, 8G5Z|1|L5|U|2350

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G5Z_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0506

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8G5Z|1|L5|G|1335
8G5Z|1|L5|G|1336
8G5Z|1|L5|A|1337
8G5Z|1|L5|G|1338
8G5Z|1|L5|U|1339
8G5Z|1|L5|OMC|1340
*
8G5Z|1|L5|G|1516
8G5Z|1|L5|G|1517
8G5Z|1|L5|A|1518
8G5Z|1|L5|C|1519
*
8G5Z|1|L5|G|1658
8G5Z|1|L5|U|1659
8G5Z|1|L5|U|1660
8G5Z|1|L5|C|1661
*
8G5Z|1|L5|G|2288
8G5Z|1|L5|C|2289
8G5Z|1|L5|C|2290
*
8G5Z|1|L5|G|2345
8G5Z|1|L5|C|2346
8G5Z|1|L5|A|2347
8G5Z|1|L5|G|2348
8G5Z|1|L5|A|2349
8G5Z|1|L5|U|2350
8G5Z|1|L5|OMC|2351

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28