J5_8G5Z_004
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8G5Z|1|L5|A|4394, 8G5Z|1|L5|G|4451, 8G5Z|1|L5|U|4555, 8G5Z|1|L5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G5Z|1|L5|A|3903
8G5Z|1|L5|G|3904
8G5Z|1|L5|A|3905
8G5Z|1|L5|A|3906
8G5Z|1|L5|G|3907
8G5Z|1|L5|A|3908||A
8G5Z|1|L5|C|3909
8G5Z|1|L5|C|3910
*
8G5Z|1|L5|OMG|4392
8G5Z|1|L5|G|4393
8G5Z|1|L5|A|4394
8G5Z|1|L5|U|4395
8G5Z|1|L5|A|4396
8G5Z|1|L5|A|4397
8G5Z|1|L5|C|4398
8G5Z|1|L5|U|4399
8G5Z|1|L5|G|4400
*
8G5Z|1|L5|C|4444
8G5Z|1|L5|U|4445
8G5Z|1|L5|U|4446
8G5Z|1|L5|5MC|4447
8G5Z|1|L5|G|4448
8G5Z|1|L5|A|4449
8G5Z|1|L5|U|4450
8G5Z|1|L5|G|4451
8G5Z|1|L5|U|4452
8G5Z|1|L5|C|4453
*
8G5Z|1|L5|G|4528
8G5Z|1|L5|G|4529
8G5Z|1|L5|UR3|4530
8G5Z|1|L5|PSU|4531
8G5Z|1|L5|PSU|4532
8G5Z|1|L5|A|4533
8G5Z|1|L5|G|4534
*
8G5Z|1|L5|PSU|4552
8G5Z|1|L5|A|4553
8G5Z|1|L5|G|4554
8G5Z|1|L5|U|4555
8G5Z|1|L5|U|4556
8G5Z|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain 5A
- eIF5A1
- Chain LA
- uL2
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- eL29
- Chain Pt
- Transfer RNA; tRNA
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