J5_8G60_002
3D structure
- PDB id
- 8G60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 8G60|1|L5|C|2289, 8G60|1|L5|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8G60_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.053
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8G60|1|L5|G|1335
8G60|1|L5|G|1336
8G60|1|L5|A|1337
8G60|1|L5|G|1338
8G60|1|L5|U|1339
8G60|1|L5|OMC|1340
*
8G60|1|L5|G|1516
8G60|1|L5|G|1517
8G60|1|L5|A|1518
8G60|1|L5|C|1519
*
8G60|1|L5|G|1658
8G60|1|L5|U|1659
8G60|1|L5|U|1660
8G60|1|L5|C|1661
*
8G60|1|L5|G|2288
8G60|1|L5|C|2289
8G60|1|L5|C|2290
*
8G60|1|L5|G|2345
8G60|1|L5|C|2346
8G60|1|L5|A|2347
8G60|1|L5|G|2348
8G60|1|L5|A|2349
8G60|1|L5|U|2350
8G60|1|L5|OMC|2351
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- uL4
- Chain LL
- eL13
- Chain LN
- eL15
- Chain La
- uL15
- Chain Le
- eL32
- Chain Lr
- eL28
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