J5_8G60_004

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

8G60|1|L5|A|3908, 8G60|1|L5|A|4394, 8G60|1|L5|G|4451, 8G60|1|L5|U|4555, 8G60|1|L5|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|L5|A|3903
8G60|1|L5|G|3904
8G60|1|L5|A|3905
8G60|1|L5|A|3906
8G60|1|L5|G|3907
8G60|1|L5|A|3908
8G60|1|L5|C|3909
8G60|1|L5|C|3910
*
8G60|1|L5|OMG|4392
8G60|1|L5|G|4393
8G60|1|L5|A|4394
8G60|1|L5|U|4395
8G60|1|L5|A|4396
8G60|1|L5|A|4397
8G60|1|L5|C|4398
8G60|1|L5|U|4399
8G60|1|L5|G|4400
*
8G60|1|L5|C|4444
8G60|1|L5|U|4445
8G60|1|L5|U|4446
8G60|1|L5|5MC|4447
8G60|1|L5|G|4448
8G60|1|L5|A|4449
8G60|1|L5|U|4450
8G60|1|L5|G|4451
8G60|1|L5|U|4452
8G60|1|L5|C|4453
*
8G60|1|L5|G|4528
8G60|1|L5|G|4529
8G60|1|L5|UR3|4530
8G60|1|L5|PSU|4531
8G60|1|L5|PSU|4532
8G60|1|L5|A|4533
8G60|1|L5|G|4534
*
8G60|1|L5|PSU|4552
8G60|1|L5|A|4553
8G60|1|L5|G|4554
8G60|1|L5|U|4555
8G60|1|L5|U|4556
8G60|1|L5|U|4557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain LB

uL3

Chain LC

uL4

Chain Lb

eL29

Chain Pt

Transfer RNA; tRNA