J5_8G6Y_001

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8G6Y|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G6Y_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.044

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G6Y|1|a|C|47
8G6Y|1|a|G|48
8G6Y|1|a|A|49
8G6Y|1|a|U|50
8G6Y|1|a|G|51
8G6Y|1|a|A|52
8G6Y|1|a|A|53
8G6Y|1|a|G|54
*
8G6Y|1|a|C|116
8G6Y|1|a|G|117
8G6Y|1|a|A|118
8G6Y|1|a|A|119
8G6Y|1|a|U|120
8G6Y|1|a|G|121
*
8G6Y|1|a|C|130
8G6Y|1|a|A|131
*
8G6Y|1|a|U|148
8G6Y|1|a|A|149
8G6Y|1|a|U|150
*
8G6Y|1|a|A|176
8G6Y|1|a|G|177
8G6Y|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34