J5_8HL4_001

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUAUCGG*CGAGUG*CUUUUC*GGAAUAAG*CGAG

Length

31 nucleotides

Bulged bases

8HL4|1|A16S|U|436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A16S|C|37
8HL4|1|A16S|U|38
8HL4|1|A16S|A|39
8HL4|1|A16S|U|40
8HL4|1|A16S|C|41
8HL4|1|A16S|G|42
8HL4|1|A16S|G|43
*
8HL4|1|A16S|C|413
8HL4|1|A16S|G|414
8HL4|1|A16S|A|415
8HL4|1|A16S|G|416
8HL4|1|A16S|U|417
8HL4|1|A16S|G|418
*
8HL4|1|A16S|C|433
8HL4|1|A16S|U|434
8HL4|1|A16S|U|435
8HL4|1|A16S|U|436
8HL4|1|A16S|U|437
8HL4|1|A16S|C|438
*
8HL4|1|A16S|G|458
8HL4|1|A16S|G|459
8HL4|1|A16S|A|460
8HL4|1|A16S|A|461
8HL4|1|A16S|U|462
8HL4|1|A16S|A|463
8HL4|1|A16S|A|464
8HL4|1|A16S|G|465
*
8HL4|1|A16S|C|511
8HL4|1|A16S|G|512
8HL4|1|A16S|A|513
8HL4|1|A16S|G|514

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS4P

30S ribosomal protein S4

Chain S12P

30S ribosomal protein S12