J5_8HL4_003

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCCAAAC*GUGUUACGA*UAGAGUAC*GGAAGUUAGG*UCUAAGG

Length

41 nucleotides

Bulged bases

8HL4|1|A23S|C|292, 8HL4|1|A23S|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A23S|C|246
8HL4|1|A23S|C|247
8HL4|1|A23S|C|248
8HL4|1|A23S|A|249
8HL4|1|A23S|A|250
8HL4|1|A23S|A|251
8HL4|1|A23S|C|252
*
8HL4|1|A23S|G|286
8HL4|1|A23S|U|287
8HL4|1|A23S|G|288
8HL4|1|A23S|U|289
8HL4|1|A23S|U|290
8HL4|1|A23S|A|291
8HL4|1|A23S|C|292
8HL4|1|A23S|G|293
8HL4|1|A23S|A|294
*
8HL4|1|A23S|U|414
8HL4|1|A23S|A|415
8HL4|1|A23S|G|416
8HL4|1|A23S|A|417
8HL4|1|A23S|G|418
8HL4|1|A23S|U|419
8HL4|1|A23S|A|420
8HL4|1|A23S|C|421
*
8HL4|1|A23S|G|442
8HL4|1|A23S|G|443
8HL4|1|A23S|A|444
8HL4|1|A23S|A|445
8HL4|1|A23S|G|446
8HL4|1|A23S|U|447
8HL4|1|A23S|U|448
8HL4|1|A23S|A|449
8HL4|1|A23S|G|450
8HL4|1|A23S|G|451
*
8HL4|1|A23S|U|463
8HL4|1|A23S|C|464
8HL4|1|A23S|U|465
8HL4|1|A23S|A|466
8HL4|1|A23S|A|467
8HL4|1|A23S|G|468
8HL4|1|A23S|G|469

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L7A1

50S ribosomal protein L7Ae