J5_8HL4_007
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGACU
- Length
- 37 nucleotides
- Bulged bases
- 8HL4|1|A23S|A|2572, 8HL4|1|A23S|U|2573, 8HL4|1|A23S|U|2628, 8HL4|1|A23S|A|2733
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HL4|1|A23S|A|2186
8HL4|1|A23S|G|2187
8HL4|1|A23S|A|2188
8HL4|1|A23S|A|2189
8HL4|1|A23S|G|2190
8HL4|1|A23S|A|2191
8HL4|1|A23S|C|2192
8HL4|1|A23S|C|2193
*
8HL4|1|A23S|G|2570
8HL4|1|A23S|G|2571
8HL4|1|A23S|A|2572
8HL4|1|A23S|U|2573
8HL4|1|A23S|A|2574
8HL4|1|A23S|A|2575
8HL4|1|A23S|C|2576
8HL4|1|A23S|A|2577
*
8HL4|1|A23S|U|2624
8HL4|1|A23S|C|2625
8HL4|1|A23S|G|2626
8HL4|1|A23S|A|2627
8HL4|1|A23S|U|2628
8HL4|1|A23S|G|2629
8HL4|1|A23S|U|2630
8HL4|1|A23S|C|2631
*
8HL4|1|A23S|G|2706
8HL4|1|A23S|G|2707
8HL4|1|A23S|U|2708
8HL4|1|A23S|U|2709
8HL4|1|A23S|U|2710
8HL4|1|A23S|A|2711
8HL4|1|A23S|G|2712
*
8HL4|1|A23S|C|2730
8HL4|1|A23S|G|2731
8HL4|1|A23S|G|2732
8HL4|1|A23S|A|2733
8HL4|1|A23S|C|2734
8HL4|1|A23S|U|2735
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL2P
- 50S ribosomal protein L2
- Chain AL3P
- 50S ribosomal protein L3
- Chain AL4P
- 50S ribosomal protein L4
- Chain APTN
- Transfer RNA; tRNA
- Chain APTP
- PHE-PHE-PHE-PHE-PHE-PHE
- Chain L10E
- 50S ribosomal protein L10e
Coloring options: