J5_8HSP_004

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8HSP|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HSP_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0539

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8HSP|1|a|C|47
8HSP|1|a|G|48
8HSP|1|a|A|49
8HSP|1|a|U|50
8HSP|1|a|G|51
8HSP|1|a|A|52
8HSP|1|a|A|53
8HSP|1|a|G|54
*
8HSP|1|a|C|116
8HSP|1|a|G|117
8HSP|1|a|A|118
8HSP|1|a|A|119
8HSP|1|a|U|120
8HSP|1|a|G|121
*
8HSP|1|a|C|130
8HSP|1|a|A|131
*
8HSP|1|a|U|148
8HSP|1|a|A|149
8HSP|1|a|U|150
*
8HSP|1|a|A|176
8HSP|1|a|G|177
8HSP|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34