3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8HTZ_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0632
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8HTZ|1|A|C|36
8HTZ|1|A|U|37
8HTZ|1|A|G|38
8HTZ|1|A|G|39
*
8HTZ|1|A|C|403
8HTZ|1|A|G|404
8HTZ|1|A|U|405
8HTZ|1|A|G|406
*
8HTZ|1|A|C|436
8HTZ|1|A|U|437
8HTZ|1|A|U|438
8HTZ|1|A|U|439
8HTZ|1|A|C|440
8HTZ|1|A|A|441
8HTZ|1|A|G|442
*
8HTZ|1|A|C|492
8HTZ|1|A|A|493
8HTZ|1|A|G|494
8HTZ|1|A|A|495
8HTZ|1|A|A|496
8HTZ|1|A|G|497
8HTZ|1|A|A|498
8HTZ|1|A|A|499
8HTZ|1|A|G|500
*
8HTZ|1|A|C|545
8HTZ|1|A|A|546
8HTZ|1|A|A|547
8HTZ|1|A|G|548

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


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