J5_8HTZ_004

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8HTZ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HTZ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0459

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8HTZ|1|a|C|47
8HTZ|1|a|G|48
8HTZ|1|a|A|49
8HTZ|1|a|U|50
8HTZ|1|a|G|51
8HTZ|1|a|A|52
8HTZ|1|a|A|53
8HTZ|1|a|G|54
*
8HTZ|1|a|C|116
8HTZ|1|a|G|117
8HTZ|1|a|A|118
8HTZ|1|a|A|119
8HTZ|1|a|U|120
8HTZ|1|a|G|121
*
8HTZ|1|a|C|130
8HTZ|1|a|A|131
*
8HTZ|1|a|U|148
8HTZ|1|a|A|149
8HTZ|1|a|U|150
*
8HTZ|1|a|A|176
8HTZ|1|a|G|177
8HTZ|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34