J5_8HU1_004

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8HU1|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HU1_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0572

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8HU1|1|a|C|47
8HU1|1|a|G|48
8HU1|1|a|A|49
8HU1|1|a|U|50
8HU1|1|a|G|51
8HU1|1|a|A|52
8HU1|1|a|A|53
8HU1|1|a|G|54
*
8HU1|1|a|C|116
8HU1|1|a|G|117
8HU1|1|a|A|118
8HU1|1|a|A|119
8HU1|1|a|U|120
8HU1|1|a|G|121
*
8HU1|1|a|C|130
8HU1|1|a|A|131
*
8HU1|1|a|U|148
8HU1|1|a|A|149
8HU1|1|a|U|150
*
8HU1|1|a|A|176
8HU1|1|a|G|177
8HU1|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34