J5_8I9R_004
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGGCAC*GUCCUAAG*UUGAUU*ACC*GUGGC
- Length
- 29 nucleotides
- Bulged bases
- 8I9R|1|C1|C|2583, 8I9R|1|C1|U|2613, 8I9R|1|C1|G|2672, 8I9R|1|C1|U|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9R|1|C1|G|2579
8I9R|1|C1|C|2580
8I9R|1|C1|G|2581
8I9R|1|C1|G|2582
8I9R|1|C1|C|2583
8I9R|1|C1|A|2584
8I9R|1|C1|C|2585
*
8I9R|1|C1|G|2609
8I9R|1|C1|U|2610
8I9R|1|C1|C|2611
8I9R|1|C1|C|2612
8I9R|1|C1|U|2613
8I9R|1|C1|A|2614
8I9R|1|C1|A|2615
8I9R|1|C1|G|2616
*
8I9R|1|C1|U|2670
8I9R|1|C1|U|2671
8I9R|1|C1|G|2672
8I9R|1|C1|A|2673
8I9R|1|C1|U|2674
8I9R|1|C1|U|2675
*
8I9R|1|C1|A|2698
8I9R|1|C1|C|2699
8I9R|1|C1|C|2700
*
8I9R|1|C1|G|2709
8I9R|1|C1|U|2710
8I9R|1|C1|G|2711
8I9R|1|C1|G|2712
8I9R|1|C1|C|2713
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CU
- rRNA-processing protein EBP2
- Chain Cx
- Ribosome biogenesis regulatory protein
- Chain Cy
- Ribosome production factor 2 homolog
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
Coloring options: