J5_8I9T_003
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG
- Length
- 27 nucleotides
- Bulged bases
- 8I9T|1|C1|U|706, 8I9T|1|C1|G|765, 8I9T|1|C1|G|766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8I9T_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.1894
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9T|1|C1|C|662
8I9T|1|C1|G|663
8I9T|1|C1|A|664
8I9T|1|C1|G|665
*
8I9T|1|C1|C|689
8I9T|1|C1|G|690
8I9T|1|C1|U|691
8I9T|1|C1|A|692
8I9T|1|C1|A|693
*
8I9T|1|C1|U|700
8I9T|1|C1|G|701
8I9T|1|C1|A|702
8I9T|1|C1|A|703
8I9T|1|C1|C|704
8I9T|1|C1|G|705
8I9T|1|C1|U|706
8I9T|1|C1|A|707
8I9T|1|C1|G|708
*
8I9T|1|C1|C|730
8I9T|1|C1|G|731
8I9T|1|C1|A|732
*
8I9T|1|C1|U|763
8I9T|1|C1|A|764
8I9T|1|C1|G|765
8I9T|1|C1|G|766
8I9T|1|C1|A|767
8I9T|1|C1|G|768
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CA
- Brix domain-containing protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
Coloring options: