J5_8I9V_003

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG

Length

27 nucleotides

Bulged bases

8I9V|1|C1|C|704, 8I9V|1|C1|G|705, 8I9V|1|C1|U|706, 8I9V|1|C1|G|765, 8I9V|1|C1|G|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8I9V_003 not in the Motif Atlas

Homologous match to J5_8C3A_003

Geometric discrepancy: 0.2735

The information below is about J5_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9V|1|C1|C|662
8I9V|1|C1|G|663
8I9V|1|C1|A|664
8I9V|1|C1|G|665
*
8I9V|1|C1|C|689
8I9V|1|C1|G|690
8I9V|1|C1|U|691
8I9V|1|C1|A|692
8I9V|1|C1|A|693
*
8I9V|1|C1|U|700
8I9V|1|C1|G|701
8I9V|1|C1|A|702
8I9V|1|C1|A|703
8I9V|1|C1|C|704
8I9V|1|C1|G|705
8I9V|1|C1|U|706
8I9V|1|C1|A|707
8I9V|1|C1|G|708
*
8I9V|1|C1|C|730
8I9V|1|C1|G|731
8I9V|1|C1|A|732
*
8I9V|1|C1|U|763
8I9V|1|C1|A|764
8I9V|1|C1|G|765
8I9V|1|C1|G|766
8I9V|1|C1|A|767
8I9V|1|C1|G|768

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain LC

60S ribosomal protein L4-like protein

Chain LQ

Ribosomal protein L18-like protein