J5_8I9W_002
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUAC*GCC*GCAGAUC
- Length
- 25 nucleotides
- Bulged bases
- 8I9W|1|C1|U|1418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9W|1|C1|G|645
8I9W|1|C1|G|646
8I9W|1|C1|A|647
8I9W|1|C1|G|648
8I9W|1|C1|U|649
8I9W|1|C1|C|650
*
8I9W|1|C1|G|780
8I9W|1|C1|G|781
8I9W|1|C1|A|782
8I9W|1|C1|C|783
*
8I9W|1|C1|G|922
8I9W|1|C1|U|923
8I9W|1|C1|U|924
8I9W|1|C1|A|925
8I9W|1|C1|C|926
*
8I9W|1|C1|G|1356
8I9W|1|C1|C|1357
8I9W|1|C1|C|1358
*
8I9W|1|C1|G|1413
8I9W|1|C1|C|1414
8I9W|1|C1|A|1415
8I9W|1|C1|G|1416
8I9W|1|C1|A|1417
8I9W|1|C1|U|1418
8I9W|1|C1|C|1419
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain CV
- Putative 60S ribosomal protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Le
- 60S ribosomal protein L32-like protein
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