J5_8IE3_005

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

8IE3|1|2|G|3922, 8IE3|1|2|A|4376, 8IE3|1|2|G|4377, 8IE3|1|2|A|4378, 8IE3|1|2|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8IE3_005 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.2804

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_96125.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8IE3|1|2|U|3920
8IE3|1|2|U|3921
8IE3|1|2|G|3922
8IE3|1|2|A|3923
*
8IE3|1|2|U|4188
8IE3|1|2|U|4189
8IE3|1|2|U|4190
8IE3|1|2|G|4191
*
8IE3|1|2|C|4204
8IE3|1|2|A|4205
*
8IE3|1|2|U|4227
8IE3|1|2|G|4228
*
8IE3|1|2|C|4375
8IE3|1|2|A|4376
8IE3|1|2|G|4377
8IE3|1|2|A|4378
8IE3|1|2|A|4379
8IE3|1|2|A|4380
8IE3|1|2|A|4381

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8