J5_8IFB_003
3D structure
- PDB id
- 8IFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8IFB|1|A|A|60, 8IFB|1|A|A|109, 8IFB|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFB_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1072
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IFB|1|A|C|58
8IFB|1|A|A|59
8IFB|1|A|A|60
8IFB|1|A|G|61
*
8IFB|1|A|C|106
8IFB|1|A|G|107
8IFB|1|A|G|108
8IFB|1|A|A|109
8IFB|1|A|C|110
8IFB|1|A|G|111
8IFB|1|A|G|112
8IFB|1|A|G|113
*
8IFB|1|A|C|314
8IFB|1|A|A|315
8IFB|1|A|C|316
*
8IFB|1|A|G|337
8IFB|1|A|A|338
8IFB|1|A|C|339
*
8IFB|1|A|G|350
8IFB|1|A|G|351
8IFB|1|A|C|352
8IFB|1|A|A|353
8IFB|1|A|G|354
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
Coloring options: