J5_8IFD_007

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

8IFD|1|2m|A|590, 8IFD|1|2m|U|591, 8IFD|1|2m|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|2m|C|30
8IFD|1|2m|U|31
8IFD|1|2m|U|32
8IFD|1|2m|G|33
8IFD|1|2m|U|34
*
8IFD|1|2m|A|521
8IFD|1|2m|A|522
8IFD|1|2m|A|523
8IFD|1|2m|U|524
8IFD|1|2m|A|525
8IFD|1|2m|A|526
8IFD|1|2m|C|527
*
8IFD|1|2m|G|558
8IFD|1|2m|G|559
8IFD|1|2m|A|560
8IFD|1|2m|A|561
8IFD|1|2m|U|562
8IFD|1|2m|G|563
8IFD|1|2m|A|564
8IFD|1|2m|G|565
*
8IFD|1|2m|C|585
8IFD|1|2m|G|586
8IFD|1|2m|A|587
8IFD|1|2m|G|588
8IFD|1|2m|G|589
8IFD|1|2m|A|590
8IFD|1|2m|U|591
8IFD|1|2m|C|592
8IFD|1|2m|C|593
8IFD|1|2m|A|594
8IFD|1|2m|U|595
*
8IFD|1|2m|A|641
8IFD|1|2m|U|642
8IFD|1|2m|A|643
8IFD|1|2m|G|644

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30