J5_8IFE_003
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8IFE|1|1A|G|3620, 8IFE|1|1A|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFE_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1455
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|G|2855
8IFE|1|1A|C|2856
8IFE|1|1A|A|2857
8IFE|1|1A|A|2858
8IFE|1|1A|G|2859
8IFE|1|1A|C|2860
8IFE|1|1A|C|2861
8IFE|1|1A|G|2862
8IFE|1|1A|G|2863
*
8IFE|1|1A|U|2887
8IFE|1|1A|G|2888
*
8IFE|1|1A|U|3613
8IFE|1|1A|G|3614
*
8IFE|1|1A|C|3618
8IFE|1|1A|G|3619
8IFE|1|1A|G|3620
8IFE|1|1A|A|3621
8IFE|1|1A|C|3622
8IFE|1|1A|C|3623
8IFE|1|1A|A|3624
8IFE|1|1A|G|3625
8IFE|1|1A|G|3626
*
8IFE|1|1A|C|3835
8IFE|1|1A|A|3836
8IFE|1|1A|C|3837
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2L
- 60S ribosomal protein L19
- Chain 2P
- 60S ribosomal protein L23
- Chain 2Q
- 60S ribosomal protein L24
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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