J5_8IFE_004
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8IFE|1|1A|A|3908, 8IFE|1|1A|A|4394, 8IFE|1|1A|U|4555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|A|3903
8IFE|1|1A|G|3904
8IFE|1|1A|A|3905
8IFE|1|1A|A|3906
8IFE|1|1A|G|3907
8IFE|1|1A|A|3908
8IFE|1|1A|C|3909
8IFE|1|1A|C|3910
*
8IFE|1|1A|G|4392
8IFE|1|1A|G|4393
8IFE|1|1A|A|4394
8IFE|1|1A|U|4395
8IFE|1|1A|A|4396
8IFE|1|1A|A|4397
8IFE|1|1A|C|4398
8IFE|1|1A|U|4399
8IFE|1|1A|G|4400
*
8IFE|1|1A|C|4444
8IFE|1|1A|U|4445
8IFE|1|1A|U|4446
8IFE|1|1A|C|4447
8IFE|1|1A|G|4448
8IFE|1|1A|A|4449
8IFE|1|1A|U|4450
8IFE|1|1A|G|4451
8IFE|1|1A|U|4452
8IFE|1|1A|C|4453
*
8IFE|1|1A|G|4528
8IFE|1|1A|G|4529
8IFE|1|1A|U|4530
8IFE|1|1A|U|4531
8IFE|1|1A|U|4532
8IFE|1|1A|A|4533
8IFE|1|1A|G|4534
*
8IFE|1|1A|U|4552
8IFE|1|1A|A|4553
8IFE|1|1A|G|4554
8IFE|1|1A|U|4555
8IFE|1|1A|U|4556
8IFE|1|1A|U|4557
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 1E
- 60S ribosomal protein L3
- Chain 1F
- 60S ribosomal protein L4
- Chain 2V
- 60S ribosomal protein L29
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