J5_8IFE_008

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGUCGCUCGCUCCUCUCCCACUU*AUGCCGACGGG*UGCAUU*ACCUCGGGCCGAU*ACGACCC

Length

60 nucleotides

Bulged bases

8IFE|1|2m|U|128, 8IFE|1|2m|C|129, 8IFE|1|2m|G|130, 8IFE|1|2m|C|131, 8IFE|1|2m|U|132, 8IFE|1|2m|C|133, 8IFE|1|2m|C|134, 8IFE|1|2m|U|135, 8IFE|1|2m|C|136, 8IFE|1|2m|U|137, 8IFE|1|2m|C|138, 8IFE|1|2m|C|139, 8IFE|1|2m|C|140, 8IFE|1|2m|C|142, 8IFE|1|2m|U|143, 8IFE|1|2m|G|183, 8IFE|1|2m|U|305, 8IFE|1|2m|G|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|G|122
8IFE|1|2m|G|123
8IFE|1|2m|U|124
8IFE|1|2m|C|125
8IFE|1|2m|G|126
8IFE|1|2m|C|127
8IFE|1|2m|U|128
8IFE|1|2m|C|129
8IFE|1|2m|G|130
8IFE|1|2m|C|131
8IFE|1|2m|U|132
8IFE|1|2m|C|133
8IFE|1|2m|C|134
8IFE|1|2m|U|135
8IFE|1|2m|C|136
8IFE|1|2m|U|137
8IFE|1|2m|C|138
8IFE|1|2m|C|139
8IFE|1|2m|C|140
8IFE|1|2m|A|141
8IFE|1|2m|C|142
8IFE|1|2m|U|143
8IFE|1|2m|U|144
*
8IFE|1|2m|A|175
8IFE|1|2m|U|176
8IFE|1|2m|G|177
8IFE|1|2m|C|178
8IFE|1|2m|C|179
8IFE|1|2m|G|180
8IFE|1|2m|A|181
8IFE|1|2m|C|182
8IFE|1|2m|G|183
8IFE|1|2m|G|184
8IFE|1|2m|G|185
*
8IFE|1|2m|U|214
8IFE|1|2m|G|215
8IFE|1|2m|C|216
8IFE|1|2m|A|217
8IFE|1|2m|U|218
8IFE|1|2m|U|219
*
8IFE|1|2m|A|302
8IFE|1|2m|C|303
8IFE|1|2m|C|304
8IFE|1|2m|U|305
8IFE|1|2m|C|306
8IFE|1|2m|G|307
8IFE|1|2m|G|308
8IFE|1|2m|G|309
8IFE|1|2m|C|310
8IFE|1|2m|C|311
8IFE|1|2m|G|312
8IFE|1|2m|A|313
8IFE|1|2m|U|314
*
8IFE|1|2m|A|336
8IFE|1|2m|C|337
8IFE|1|2m|G|338
8IFE|1|2m|A|339
8IFE|1|2m|C|340
8IFE|1|2m|C|341
8IFE|1|2m|C|342

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 3H

40S ribosomal protein S6