J5_8IFE_009

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UG*CGAUGAAG*CGAACG*CG*UA

Length

20 nucleotides

Bulged bases

8IFE|1|1C|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|U|20
8IFE|1|1A|G|21
*
8IFE|1|1C|C|35
8IFE|1|1C|G|36
8IFE|1|1C|A|37
8IFE|1|1C|U|38
8IFE|1|1C|G|39
8IFE|1|1C|A|40
8IFE|1|1C|A|41
8IFE|1|1C|G|42
*
8IFE|1|1C|C|101
8IFE|1|1C|G|102
8IFE|1|1C|A|103
8IFE|1|1C|A|104
8IFE|1|1C|C|105
8IFE|1|1C|G|106
*
8IFE|1|1C|C|113
8IFE|1|1C|G|114
*
8IFE|1|1C|U|136
8IFE|1|1C|A|137

Current chains

Chain 1A

28S ribosomal RNA

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 2H

60S ribosomal protein L15

Chain 2R

60S ribosomal protein L23a

Chain 2b

60S ribosomal protein L35

Chain 2d

60S ribosomal protein L37

Chain 2f

60S ribosomal protein L39