3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUG*CGAUGAAG*CGAACG*CG*UAC
Length
22 nucleotides
Bulged bases
8INE|1|8|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8INE_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.1145
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_27223.1
Basepair signature
cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8INE|1|2|G|19
8INE|1|2|U|20
8INE|1|2|G|21
*
8INE|1|8|C|35
8INE|1|8|G|36
8INE|1|8|A|37
8INE|1|8|U|38
8INE|1|8|G|39
8INE|1|8|A|40
8INE|1|8|A|41
8INE|1|8|G|42
*
8INE|1|8|C|101
8INE|1|8|G|102
8INE|1|8|A|103
8INE|1|8|A|104
8INE|1|8|C|105
8INE|1|8|G|106
*
8INE|1|8|C|113
8INE|1|8|G|114
*
8INE|1|8|U|136
8INE|1|8|A|137
8INE|1|8|C|138

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain H
60S ribosomal protein L35
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39
Chain U
60S ribosomal protein L15
Chain g
60S ribosomal protein L23a
Chain v
Pescadillo homolog

Coloring options:


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