J5_8INF_001
3D structure
- PDB id
- 8INF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8INF|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8INF_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1114
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8INF|1|2|G|19
8INF|1|2|U|20
8INF|1|2|G|21
*
8INF|1|8|C|35
8INF|1|8|G|36
8INF|1|8|A|37
8INF|1|8|U|38
8INF|1|8|G|39
8INF|1|8|A|40
8INF|1|8|A|41
8INF|1|8|G|42
*
8INF|1|8|C|101
8INF|1|8|G|102
8INF|1|8|A|103
8INF|1|8|A|104
8INF|1|8|C|105
8INF|1|8|G|106
*
8INF|1|8|C|113
8INF|1|8|G|114
*
8INF|1|8|U|136
8INF|1|8|A|137
8INF|1|8|C|138
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain U
- 60S ribosomal protein L15
- Chain g
- 60S ribosomal protein L23a
- Chain v
- Pescadillo homolog
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