3D structure

PDB id
8IPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State D'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUG*CGAUGAAG*CGAACG*CG*UAC
Length
22 nucleotides
Bulged bases
8IPY|1|8|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8IPY_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.1204
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_27223.1
Basepair signature
cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8IPY|1|2|G|19
8IPY|1|2|U|20
8IPY|1|2|G|21
*
8IPY|1|8|C|35
8IPY|1|8|G|36
8IPY|1|8|A|37
8IPY|1|8|U|38
8IPY|1|8|G|39
8IPY|1|8|A|40
8IPY|1|8|A|41
8IPY|1|8|G|42
*
8IPY|1|8|C|101
8IPY|1|8|G|102
8IPY|1|8|A|103
8IPY|1|8|A|104
8IPY|1|8|C|105
8IPY|1|8|G|106
*
8IPY|1|8|C|113
8IPY|1|8|G|114
*
8IPY|1|8|U|136
8IPY|1|8|A|137
8IPY|1|8|C|138

Current chains

Chain 2
28S rRNA
Chain 8
5.8S rRNA

Nearby chains

Chain H
60S ribosomal protein L35
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39
Chain U
60S ribosomal protein L15
Chain g
60S ribosomal protein L23a
Chain q
Pescadillo homolog

Coloring options:


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