J5_8IPY_003
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8IPY|1|2|G|3620, 8IPY|1|2|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IPY_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1749
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPY|1|2|G|2855
8IPY|1|2|C|2856
8IPY|1|2|A|2857
8IPY|1|2|A|2858
8IPY|1|2|G|2859
8IPY|1|2|C|2860
8IPY|1|2|OMC|2861
8IPY|1|2|G|2862
8IPY|1|2|G|2863
*
8IPY|1|2|U|2887
8IPY|1|2|G|2888
*
8IPY|1|2|U|3613
8IPY|1|2|G|3614
*
8IPY|1|2|C|3618
8IPY|1|2|G|3619
8IPY|1|2|G|3620
8IPY|1|2|A|3621
8IPY|1|2|C|3622
8IPY|1|2|C|3623
8IPY|1|2|A|3624
8IPY|1|2|G|3625
8IPY|1|2|G|3626
*
8IPY|1|2|C|3835
8IPY|1|2|A|3836
8IPY|1|2|C|3837
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 7
- Probable ribosome biogenesis protein RLP24
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain a
- 60S ribosomal protein L19
- Chain e
- 60S ribosomal protein L23
- Chain w
- G Protein Nucleolar 2
Coloring options: