J5_8IR1_001
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8IR1|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IR1_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1334
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IR1|1|2|G|19
8IR1|1|2|U|20
8IR1|1|2|G|21
*
8IR1|1|8|C|35
8IR1|1|8|G|36
8IR1|1|8|A|37
8IR1|1|8|U|38
8IR1|1|8|G|39
8IR1|1|8|A|40
8IR1|1|8|A|41
8IR1|1|8|G|42
*
8IR1|1|8|C|101
8IR1|1|8|G|102
8IR1|1|8|A|103
8IR1|1|8|A|104
8IR1|1|8|C|105
8IR1|1|8|G|106
*
8IR1|1|8|C|113
8IR1|1|8|G|114
*
8IR1|1|8|U|136
8IR1|1|8|A|137
8IR1|1|8|C|138
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRMA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain U
- 60S ribosomal protein L15
- Chain g
- 60S ribosomal protein L23a
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