J5_8IR1_004
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAC*GUCCUAAG*UUGAU*AC*GGGC
- Length
- 23 nucleotides
- Bulged bases
- 8IR1|1|2|C|4231, 8IR1|1|2|G|4291, 8IR1|1|2|A|4292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IR1|1|2|G|4201
8IR1|1|2|U|4202
8IR1|1|2|A|4203
8IR1|1|2|C|4204
*
8IR1|1|2|G|4228
8IR1|1|2|U|4229
8IR1|1|2|C|4230
8IR1|1|2|C|4231
8IR1|1|2|U|4232
8IR1|1|2|A|4233
8IR1|1|2|A|4234
8IR1|1|2|G|4235
*
8IR1|1|2|U|4289
8IR1|1|2|U|4290
8IR1|1|2|G|4291
8IR1|1|2|A|4292
8IR1|1|2|U|4293
*
8IR1|1|2|A|4317
8IR1|1|2|C|4318
*
8IR1|1|2|G|4329
8IR1|1|2|G|4330
8IR1|1|2|G|4331
8IR1|1|2|C|4332
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L5
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain R
- Ribosome biogenesis regulatory protein homolog
- Chain T
- Ribosome production factor 2 homolog
- Chain c
- 60S ribosomal protein L21
- Chain w
- G Protein Nucleolar 2
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