J5_8J1Z_001

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8J1Z|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8J1Z_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0587

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8J1Z|1|a|C|47
8J1Z|1|a|G|48
8J1Z|1|a|A|49
8J1Z|1|a|U|50
8J1Z|1|a|G|51
8J1Z|1|a|A|52
8J1Z|1|a|A|53
8J1Z|1|a|G|54
*
8J1Z|1|a|C|116
8J1Z|1|a|G|117
8J1Z|1|a|A|118
8J1Z|1|a|A|119
8J1Z|1|a|U|120
8J1Z|1|a|G|121
*
8J1Z|1|a|C|130
8J1Z|1|a|A|131
*
8J1Z|1|a|U|148
8J1Z|1|a|A|149
8J1Z|1|a|U|150
*
8J1Z|1|a|A|176
8J1Z|1|a|G|177
8J1Z|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34