J5_8JDJ_008

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCGCUC*GGG*UGC*GCCG*CGA

Length

19 nucleotides

Bulged bases

8JDJ|1|w|G|126, 8JDJ|1|w|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|w|U|124
8JDJ|1|w|C|125
8JDJ|1|w|G|126
8JDJ|1|w|C|127
8JDJ|1|w|U|128
8JDJ|1|w|C|129
*
8JDJ|1|w|G|183
8JDJ|1|w|G|184
8JDJ|1|w|G|185
*
8JDJ|1|w|U|214
8JDJ|1|w|G|215
8JDJ|1|w|C|216
*
8JDJ|1|w|G|309
8JDJ|1|w|C|310
8JDJ|1|w|C|311
8JDJ|1|w|G|312
*
8JDJ|1|w|C|337
8JDJ|1|w|G|338
8JDJ|1|w|A|339

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 3

40S ribosomal protein S6

Chain 5

40S ribosomal protein S8