J5_8JDK_005
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8JDK|1|D|G|3922, 8JDK|1|D|A|4376, 8JDK|1|D|G|4377, 8JDK|1|D|A|4378, 8JDK|1|D|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8JDK_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3213
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8JDK|1|D|PSU|3920
8JDK|1|D|U|3921
8JDK|1|D|G|3922
8JDK|1|D|A|3923
*
8JDK|1|D|U|4188
8JDK|1|D|U|4189
8JDK|1|D|U|4190
8JDK|1|D|G|4191
*
8JDK|1|D|C|4204
8JDK|1|D|A|4205
*
8JDK|1|D|OMU|4227
8JDK|1|D|OMG|4228
*
8JDK|1|D|C|4375
8JDK|1|D|A|4376
8JDK|1|D|G|4377
8JDK|1|D|A|4378
8JDK|1|D|A|4379
8JDK|1|D|A|4380
8JDK|1|D|A|4381
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain S
- 60S ribosomal protein L15
- Chain V
- 60S ribosomal protein L18
- Chain Y
- 60S ribosomal protein L21
- Chain f
- 60S ribosomal protein L27a
- Chain g
- 60S ribosomal protein L29
- Chain t
- 60S ribosomal protein L36a
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