J5_8JDK_008
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GUCGCUC*GGG*UGC*GCCG*CGACC
- Length
- 22 nucleotides
- Bulged bases
- 8JDK|1|w|G|126, 8JDK|1|w|C|127
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|w|G|123
8JDK|1|w|U|124
8JDK|1|w|C|125
8JDK|1|w|G|126
8JDK|1|w|C|127
8JDK|1|w|U|128
8JDK|1|w|C|129
*
8JDK|1|w|G|183
8JDK|1|w|G|184
8JDK|1|w|G|185
*
8JDK|1|w|U|214
8JDK|1|w|G|215
8JDK|1|w|C|216
*
8JDK|1|w|G|309
8JDK|1|w|C|310
8JDK|1|w|C|311
8JDK|1|w|G|312
*
8JDK|1|w|C|337
8JDK|1|w|G|338
8JDK|1|w|A|339
8JDK|1|w|C|340
8JDK|1|w|C|341
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 3
- 40S ribosomal protein S6
- Chain 5
- 40S ribosomal protein S8
Coloring options: