J5_8JDL_004
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8JDL|1|D|A|3908, 8JDL|1|D|A|4394, 8JDL|1|D|G|4451, 8JDL|1|D|U|4452, 8JDL|1|D|U|4555, 8JDL|1|D|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDL|1|D|A|3903
8JDL|1|D|G|3904
8JDL|1|D|A|3905
8JDL|1|D|A|3906
8JDL|1|D|G|3907
8JDL|1|D|A|3908
8JDL|1|D|C|3909
8JDL|1|D|C|3910
*
8JDL|1|D|OMG|4392
8JDL|1|D|G|4393
8JDL|1|D|A|4394
8JDL|1|D|U|4395
8JDL|1|D|A|4396
8JDL|1|D|A|4397
8JDL|1|D|C|4398
8JDL|1|D|U|4399
8JDL|1|D|G|4400
*
8JDL|1|D|C|4444
8JDL|1|D|U|4445
8JDL|1|D|U|4446
8JDL|1|D|5MC|4447
8JDL|1|D|G|4448
8JDL|1|D|A|4449
8JDL|1|D|U|4450
8JDL|1|D|G|4451
8JDL|1|D|U|4452
8JDL|1|D|C|4453
*
8JDL|1|D|G|4528
8JDL|1|D|G|4529
8JDL|1|D|UR3|4530
8JDL|1|D|U|4531
8JDL|1|D|PSU|4532
8JDL|1|D|A|4533
8JDL|1|D|G|4534
*
8JDL|1|D|PSU|4552
8JDL|1|D|A|4553
8JDL|1|D|G|4554
8JDL|1|D|U|4555
8JDL|1|D|U|4556
8JDL|1|D|U|4557
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain G
- 60S ribosomal protein L8
- Chain H
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L4
- Chain f
- 60S ribosomal protein L27a
- Chain g
- 60S ribosomal protein L29
Coloring options: