J5_8JOZ_001

3D structure

PDB id

8JOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser

Experimental method

X-RAY DIFFRACTION

Resolution

2.22 Å

Loop

Sequence

G(4SU)GG*CAC*GCG*UCC*GC

Length

15 nucleotides

Bulged bases

8JOZ|1|B|4SU|8, 8JOZ|1|B|G|9, 8JOZ|1|B|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_97113.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8JOZ|1|B|G|7
8JOZ|1|B|4SU|8
8JOZ|1|B|G|9
8JOZ|1|B|G|10
*
8JOZ|1|B|C|25
8JOZ|1|B|A|26
8JOZ|1|B|C|27
*
8JOZ|1|B|G|43
8JOZ|1|B|C|44
8JOZ|1|B|G|45
*
8JOZ|1|B|U|47|||K
8JOZ|1|B|C|48
8JOZ|1|B|C|49
*
8JOZ|1|B|G|65
8JOZ|1|B|C|66

Current chains

Chain B

tRNA Ser (88-MER)

Nearby chains