J5_8K2C_004

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU

Length

42 nucleotides

Bulged bases

8K2C|1|L5|A|3908, 8K2C|1|L5|A|4394, 8K2C|1|L5|G|4451, 8K2C|1|L5|U|4555, 8K2C|1|L5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|A|3902
8K2C|1|L5|A|3903
8K2C|1|L5|G|3904
8K2C|1|L5|A|3905
8K2C|1|L5|A|3906
8K2C|1|L5|G|3907
8K2C|1|L5|A|3908
8K2C|1|L5|C|3909
8K2C|1|L5|C|3910
*
8K2C|1|L5|G|4392
8K2C|1|L5|G|4393
8K2C|1|L5|A|4394
8K2C|1|L5|U|4395
8K2C|1|L5|A|4396
8K2C|1|L5|A|4397
8K2C|1|L5|C|4398
8K2C|1|L5|U|4399
8K2C|1|L5|G|4400
*
8K2C|1|L5|C|4444
8K2C|1|L5|U|4445
8K2C|1|L5|U|4446
8K2C|1|L5|C|4447
8K2C|1|L5|G|4448
8K2C|1|L5|A|4449
8K2C|1|L5|U|4450
8K2C|1|L5|G|4451
8K2C|1|L5|U|4452
8K2C|1|L5|C|4453
*
8K2C|1|L5|G|4528
8K2C|1|L5|G|4529
8K2C|1|L5|U|4530
8K2C|1|L5|U|4531
8K2C|1|L5|U|4532
8K2C|1|L5|A|4533
8K2C|1|L5|G|4534
*
8K2C|1|L5|U|4552
8K2C|1|L5|A|4553
8K2C|1|L5|G|4554
8K2C|1|L5|U|4555
8K2C|1|L5|U|4556
8K2C|1|L5|U|4557
8K2C|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

60S ribosomal protein L3

Chain LC

60S ribosomal protein L4

Chain Lb

60S ribosomal protein L29