J5_8K3O_003
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CCUAACACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGUGGG
- Length
- 41 nucleotides
- Bulged bases
- 8K3O|1|A|C|48, 8K3O|1|A|A|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K3O|1|A|C|47
8K3O|1|A|C|48
8K3O|1|A|U|49
8K3O|1|A|A|50
8K3O|1|A|A|51
8K3O|1|A|C|52
8K3O|1|A|A|53
8K3O|1|A|C|54
8K3O|1|A|A|55
8K3O|1|A|U|56
8K3O|1|A|G|57
8K3O|1|A|C|58
8K3O|1|A|A|59
8K3O|1|A|A|60
8K3O|1|A|G|61
*
8K3O|1|A|C|106
8K3O|1|A|G|107
8K3O|1|A|G|108
8K3O|1|A|A|109
8K3O|1|A|C|110
8K3O|1|A|G|111
8K3O|1|A|G|112
8K3O|1|A|G|113
*
8K3O|1|A|C|314
8K3O|1|A|A|315
8K3O|1|A|C|316
*
8K3O|1|A|G|337
8K3O|1|A|A|338
8K3O|1|A|C|339
*
8K3O|1|A|G|350
8K3O|1|A|G|351
8K3O|1|A|C|352
8K3O|1|A|A|353
8K3O|1|A|G|354
8K3O|1|A|C|355
8K3O|1|A|A|356
8K3O|1|A|G|357
8K3O|1|A|U|358
8K3O|1|A|G|359
8K3O|1|A|G|360
8K3O|1|A|G|361
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: