J5_8K82_001
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8K82|1|C3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8K82_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0669
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|A|20
8K82|1|C1|G|21
8K82|1|C1|G|22
*
8K82|1|C3|C|35
8K82|1|C3|G|36
8K82|1|C3|A|37
8K82|1|C3|U|38
8K82|1|C3|G|39
8K82|1|C3|A|40
8K82|1|C3|A|41
8K82|1|C3|G|42
*
8K82|1|C3|U|102
8K82|1|C3|G|103
8K82|1|C3|A|104
8K82|1|C3|A|105
8K82|1|C3|C|106
8K82|1|C3|G|107
*
8K82|1|C3|C|115
8K82|1|C3|G|116
*
8K82|1|C3|C|137
8K82|1|C3|A|138
8K82|1|C3|U|139
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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