J5_8K82_004
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8K82|1|C1|G|2116, 8K82|1|C1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8K82_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0841
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|G|1906
8K82|1|C1|C|1907
8K82|1|C1|A|1908
8K82|1|C1|A|1909
8K82|1|C1|A|1910
8K82|1|C1|A|1911
8K82|1|C1|U|1912
8K82|1|C1|A|1913
8K82|1|C1|G|1914
*
8K82|1|C1|U|1938
8K82|1|C1|G|1939
*
8K82|1|C1|U|2109
8K82|1|C1|G|2110
*
8K82|1|C1|C|2114
8K82|1|C1|G|2115
8K82|1|C1|G|2116
8K82|1|C1|A|2117
8K82|1|C1|C|2118
8K82|1|C1|A|2119
8K82|1|C1|A|2120
8K82|1|C1|G|2121
8K82|1|C1|G|2122
*
8K82|1|C1|C|2331
8K82|1|C1|A|2332
8K82|1|C1|C|2333
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain LV
- Large ribosomal subunit protein uL14A
- Chain LW
- Large ribosomal subunit protein eL24A
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