Loop J5_8K82

3D structure

PDB id: 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 8K82|1|C2|U|128, 8K82|1|C2|C|130, 8K82|1|C2|U|132, 8K82|1|C2|U|134, 8K82|1|C2|A|140, 8K82|1|C2|U|141, 8K82|1|C2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8K82|1|C2|A|124
8K82|1|C2|U|125
8K82|1|C2|A|126
8K82|1|C2|G|127
8K82|1|C2|U|128
8K82|1|C2|U|129
8K82|1|C2|C|130
8K82|1|C2|C|131
8K82|1|C2|U|132
8K82|1|C2|U|133
8K82|1|C2|U|134
8K82|1|C2|A|135
8K82|1|C2|C|136
8K82|1|C2|U|137
8K82|1|C2|A|138
8K82|1|C2|C|139
8K82|1|C2|A|140
8K82|1|C2|U|141
8K82|1|C2|G|142
8K82|1|C2|G|143
*
8K82|1|C2|C|172
8K82|1|C2|A|173
8K82|1|C2|U|174
8K82|1|C2|G|175
8K82|1|C2|C|176
8K82|1|C2|U|177
8K82|1|C2|U|178
8K82|1|C2|A|179
8K82|1|C2|A|180
8K82|1|C2|A|181
8K82|1|C2|A|182
*
8K82|1|C2|U|203
8K82|1|C2|G|204
*
8K82|1|C2|C|263
8K82|1|C2|G|264
8K82|1|C2|A|265
8K82|1|C2|A|266
8K82|1|C2|U|267
*
8K82|1|C2|A|288
8K82|1|C2|U|289
8K82|1|C2|G|290
8K82|1|C2|G|291
8K82|1|C2|U|292
8K82|1|C2|U|293

Current chains

Chain C2: 18S rRNA

Nearby chains

Chain SE: 40S ribosomal protein S4-A
Chain SG: 40S ribosomal protein S6-A
Chain SI: 40S ribosomal protein S8-A

J5_8K82_010