J5_8K82_011
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 8K82|1|C2|U|639, 8K82|1|C2|U|694, 8K82|1|C2|C|696, 8K82|1|C2|C|697, 8K82|1|C2|U|813, 8K82|1|C2|G|815, 8K82|1|C2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C2|A|636
8K82|1|C2|C|637
8K82|1|C2|U|638
8K82|1|C2|U|639
8K82|1|C2|U|640
8K82|1|C2|G|641
*
8K82|1|C2|U|693
8K82|1|C2|U|694
8K82|1|C2|U|695
8K82|1|C2|C|696
8K82|1|C2|C|697
8K82|1|C2|U|698
8K82|1|C2|U|699
*
8K82|1|C2|G|739
8K82|1|C2|A|740
8K82|1|C2|C|741
8K82|1|C2|U|742
8K82|1|C2|U|743
8K82|1|C2|U|744
*
8K82|1|C2|A|807
8K82|1|C2|U|808
8K82|1|C2|A|809
8K82|1|C2|G|810
8K82|1|C2|A|811
8K82|1|C2|A|812
8K82|1|C2|U|813
8K82|1|C2|A|814
8K82|1|C2|G|815
8K82|1|C2|G|816
8K82|1|C2|A|817
*
8K82|1|C2|U|854
8K82|1|C2|A|855
8K82|1|C2|A|856
8K82|1|C2|U|857
8K82|1|C2|G|858
8K82|1|C2|A|859
8K82|1|C2|U|860
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain SE
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
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