J5_8OEQ_003
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8OEQ|1|1|A|717, 8OEQ|1|1|A|780, 8OEQ|1|1|G|781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OEQ_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0296
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|1|C|673
8OEQ|1|1|G|674
8OEQ|1|1|A|675
8OEQ|1|1|G|676
*
8OEQ|1|1|C|700
8OEQ|1|1|G|701
8OEQ|1|1|U|702
8OEQ|1|1|A|703
8OEQ|1|1|A|704
*
8OEQ|1|1|U|711
8OEQ|1|1|G|712
8OEQ|1|1|A|713
8OEQ|1|1|A|714
8OEQ|1|1|C|715
8OEQ|1|1|G|716
8OEQ|1|1|A|717
8OEQ|1|1|A|718
8OEQ|1|1|G|719
*
8OEQ|1|1|C|745
8OEQ|1|1|G|746
8OEQ|1|1|A|747
*
8OEQ|1|1|U|778
8OEQ|1|1|A|779
8OEQ|1|1|A|780
8OEQ|1|1|G|781
8OEQ|1|1|A|782
8OEQ|1|1|G|783
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain l
- 60S ribosomal protein L4-B
- Chain t
- 60S ribosomal protein L13
- Chain y
- 60S ribosomal protein L18-A
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