Loop J5_8OEQ

3D structure

PDB id: 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 8OEQ|1|AS|A|2382, 8OEQ|1|AS|A|2789, 8OEQ|1|AS|G|2846, 8OEQ|1|AS|U|2950, 8OEQ|1|AS|U|2951
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OEQ|1|AS|A|2377
8OEQ|1|AS|G|2378
8OEQ|1|AS|A|2379
8OEQ|1|AS|A|2380
8OEQ|1|AS|G|2381
8OEQ|1|AS|A|2382
8OEQ|1|AS|C|2383
8OEQ|1|AS|C|2384
*
8OEQ|1|AS|G|2787
8OEQ|1|AS|G|2788
8OEQ|1|AS|A|2789
8OEQ|1|AS|U|2790
8OEQ|1|AS|A|2791
8OEQ|1|AS|A|2792
8OEQ|1|AS|C|2793
8OEQ|1|AS|U|2794
8OEQ|1|AS|G|2795
*
8OEQ|1|AS|C|2839
8OEQ|1|AS|U|2840
8OEQ|1|AS|U|2841
8OEQ|1|AS|C|2842
8OEQ|1|AS|G|2843
8OEQ|1|AS|A|2844
8OEQ|1|AS|U|2845
8OEQ|1|AS|G|2846
8OEQ|1|AS|U|2847
8OEQ|1|AS|C|2848
*
8OEQ|1|AS|G|2923
8OEQ|1|AS|G|2924
8OEQ|1|AS|U|2925
8OEQ|1|AS|U|2926
8OEQ|1|AS|U|2927
8OEQ|1|AS|A|2928
8OEQ|1|AS|G|2929
*
8OEQ|1|AS|U|2947
8OEQ|1|AS|A|2948
8OEQ|1|AS|G|2949
8OEQ|1|AS|U|2950
8OEQ|1|AS|U|2951
8OEQ|1|AS|U|2952

Current chains

Chain AS: 25S ribosomal RNA

Nearby chains

Chain AW: 60S ribosomal protein L2-B
Chain AX: 60S ribosomal protein L3
Chain AY: 60S ribosomal protein L4-B
Chain BV: 60S ribosomal protein L28
Chain BW: 60S ribosomal protein L29

J5_8OEQ_011