J5_8OEQ_016

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AAAG

Length

35 nucleotides

Bulged bases

8OEQ|1|CM|C|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OEQ|1|CM|C|31
8OEQ|1|CM|U|32
8OEQ|1|CM|U|33
8OEQ|1|CM|G|34
8OEQ|1|CM|U|35
*
8OEQ|1|CM|A|471
8OEQ|1|CM|A|472
8OEQ|1|CM|A|473
8OEQ|1|CM|U|474
8OEQ|1|CM|A|475
8OEQ|1|CM|A|476
8OEQ|1|CM|C|477
*
8OEQ|1|CM|G|507
8OEQ|1|CM|G|508
8OEQ|1|CM|A|509
8OEQ|1|CM|A|510
8OEQ|1|CM|U|511
8OEQ|1|CM|G|512
8OEQ|1|CM|A|513
8OEQ|1|CM|G|514
*
8OEQ|1|CM|C|534
8OEQ|1|CM|G|535
8OEQ|1|CM|A|536
8OEQ|1|CM|G|537
8OEQ|1|CM|G|538
8OEQ|1|CM|A|539
8OEQ|1|CM|A|540
8OEQ|1|CM|C|541
8OEQ|1|CM|A|542
8OEQ|1|CM|A|543
8OEQ|1|CM|U|544
*
8OEQ|1|CM|A|590
8OEQ|1|CM|A|591
8OEQ|1|CM|A|592
8OEQ|1|CM|G|593

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CW

Ribosomal protein S4

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30