J5_8OEQ_018

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACCUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

8OEQ|1|CM|U|637, 8OEQ|1|CM|U|692, 8OEQ|1|CM|U|797, 8OEQ|1|CM|G|799, 8OEQ|1|CM|A|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OEQ|1|CM|A|634
8OEQ|1|CM|C|635
8OEQ|1|CM|C|636
8OEQ|1|CM|U|637
8OEQ|1|CM|U|638
8OEQ|1|CM|G|639
*
8OEQ|1|CM|U|691
8OEQ|1|CM|U|692
8OEQ|1|CM|U|693
8OEQ|1|CM|C|694
8OEQ|1|CM|C|695
8OEQ|1|CM|U|696
8OEQ|1|CM|U|697
*
8OEQ|1|CM|G|724
8OEQ|1|CM|A|725
8OEQ|1|CM|C|726
8OEQ|1|CM|U|727
8OEQ|1|CM|U|728
8OEQ|1|CM|U|729
*
8OEQ|1|CM|A|791
8OEQ|1|CM|U|792
8OEQ|1|CM|A|793
8OEQ|1|CM|G|794
8OEQ|1|CM|A|795
8OEQ|1|CM|A|796
8OEQ|1|CM|U|797
8OEQ|1|CM|A|798
8OEQ|1|CM|G|799
8OEQ|1|CM|G|800
8OEQ|1|CM|A|801
*
8OEQ|1|CM|U|839
8OEQ|1|CM|A|840
8OEQ|1|CM|A|841
8OEQ|1|CM|U|842
8OEQ|1|CM|G|843
8OEQ|1|CM|A|844
8OEQ|1|CM|U|845

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain CR

40S ribosomal protein S4

Chain CU

40S ribosomal protein S7

Chain CY

40S ribosomal protein S11A

Chain DA

40S ribosomal protein S13

Chain DJ

40S ribosomal protein S22-A