J5_8OH6_018
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- ACCUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 39 nucleotides
- Bulged bases
- 8OH6|1|CM|U|637, 8OH6|1|CM|U|692, 8OH6|1|CM|C|694, 8OH6|1|CM|C|695, 8OH6|1|CM|U|797, 8OH6|1|CM|G|799, 8OH6|1|CM|A|841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OH6|1|CM|A|634
8OH6|1|CM|C|635
8OH6|1|CM|C|636
8OH6|1|CM|U|637
8OH6|1|CM|U|638
8OH6|1|CM|G|639
*
8OH6|1|CM|U|691
8OH6|1|CM|U|692
8OH6|1|CM|U|693
8OH6|1|CM|C|694
8OH6|1|CM|C|695
8OH6|1|CM|U|696
8OH6|1|CM|U|697
8OH6|1|CM|C|698
*
8OH6|1|CM|G|723
8OH6|1|CM|G|724
8OH6|1|CM|A|725
8OH6|1|CM|C|726
8OH6|1|CM|U|727
8OH6|1|CM|U|728
8OH6|1|CM|U|729
*
8OH6|1|CM|A|791
8OH6|1|CM|U|792
8OH6|1|CM|A|793
8OH6|1|CM|G|794
8OH6|1|CM|A|795
8OH6|1|CM|A|796
8OH6|1|CM|U|797
8OH6|1|CM|A|798
8OH6|1|CM|G|799
8OH6|1|CM|G|800
8OH6|1|CM|A|801
*
8OH6|1|CM|U|839
8OH6|1|CM|A|840
8OH6|1|CM|A|841
8OH6|1|CM|U|842
8OH6|1|CM|G|843
8OH6|1|CM|A|844
8OH6|1|CM|U|845
Current chains
- Chain CM
- 18S
Nearby chains
- Chain BM
- 60S ribosomal protein L19-A
- Chain CR
- 40S ribosomal protein S4
- Chain CU
- 40S ribosomal protein S7
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
- Chain DJ
- 40S ribosomal protein S22-A
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