Loop J5_8OHD

3D structure

PDB id: 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
Description: 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 8OHD|1|5|A|3908, 8OHD|1|5|A|4394, 8OHD|1|5|G|4451, 8OHD|1|5|U|4555, 8OHD|1|5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OHD|1|5|A|3903
8OHD|1|5|G|3904
8OHD|1|5|A|3905
8OHD|1|5|A|3906
8OHD|1|5|G|3907
8OHD|1|5|A|3908
8OHD|1|5|C|3909
8OHD|1|5|C|3910
*
8OHD|1|5|G|4392
8OHD|1|5|G|4393
8OHD|1|5|A|4394
8OHD|1|5|U|4395
8OHD|1|5|A|4396
8OHD|1|5|A|4397
8OHD|1|5|C|4398
8OHD|1|5|U|4399
8OHD|1|5|G|4400
*
8OHD|1|5|C|4444
8OHD|1|5|U|4445
8OHD|1|5|U|4446
8OHD|1|5|C|4447
8OHD|1|5|G|4448
8OHD|1|5|A|4449
8OHD|1|5|U|4450
8OHD|1|5|G|4451
8OHD|1|5|U|4452
8OHD|1|5|C|4453
*
8OHD|1|5|G|4528
8OHD|1|5|G|4529
8OHD|1|5|U|4530
8OHD|1|5|U|4531
8OHD|1|5|U|4532
8OHD|1|5|A|4533
8OHD|1|5|G|4534
*
8OHD|1|5|U|4552
8OHD|1|5|A|4553
8OHD|1|5|G|4554
8OHD|1|5|U|4555
8OHD|1|5|U|4556
8OHD|1|5|U|4557

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain A: E3 UFM1-protein ligase 1
Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain Lb: 60S ribosomal protein L29

J5_8OHD_004