J5_8OIQ_002
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUUG*(PSU)GAGUUCAG*CGGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8OIQ|1|B8|A|1271, 8OIQ|1|B8|U|1272, 8OIQ|1|B8|U|1432
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIQ|1|B8|A|1052
8OIQ|1|B8|G|1053
8OIQ|1|B8|A|1054
8OIQ|1|B8|A|1055
8OIQ|1|B8|G|1056
8OIQ|1|B8|A|1057
8OIQ|1|B8|C|1058
8OIQ|1|B8|C|1059
*
8OIQ|1|B8|G|1269
8OIQ|1|B8|G|1270
8OIQ|1|B8|A|1271
8OIQ|1|B8|U|1272
8OIQ|1|B8|A|1273
8OIQ|1|B8|A|1274
8OIQ|1|B8|C|1275
8OIQ|1|B8|A|1276
*
8OIQ|1|B8|U|1323
8OIQ|1|B8|C|1324
8OIQ|1|B8|G|1325
8OIQ|1|B8|A|1326
8OIQ|1|B8|U|1327
8OIQ|1|B8|G|1328
8OIQ|1|B8|U|1329
8OIQ|1|B8|U|1330
8OIQ|1|B8|G|1331
*
8OIQ|1|B8|PSU|1403
8OIQ|1|B8|G|1404
8OIQ|1|B8|A|1405
8OIQ|1|B8|G|1406
8OIQ|1|B8|U|1407
8OIQ|1|B8|U|1408
8OIQ|1|B8|C|1409
8OIQ|1|B8|A|1410
8OIQ|1|B8|G|1411
*
8OIQ|1|B8|C|1429
8OIQ|1|B8|G|1430
8OIQ|1|B8|G|1431
8OIQ|1|B8|U|1432
8OIQ|1|B8|U|1433
8OIQ|1|B8|U|1434
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AG
- P-site Met-tRNA(fMet)
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BA
- uL22m
- Chain BH
- Mitochondrial ribosomal protein L32
- Chain BM
- ICT1
- Chain BN
- Mitochondrial ribosomal protein L4
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain BU
- uL16m
- Chain Bu
- Mitochondrial ribosomal protein L45
Coloring options: