J5_8OIQ_003
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUA*UUCG*CUC*GAG*CGGAACAA
- Length
- 22 nucleotides
- Bulged bases
- 8OIQ|1|B8|U|1071, 8OIQ|1|B8|G|1252, 8OIQ|1|B8|G|1253, 8OIQ|1|B8|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIQ|1|B8|U|1069
8OIQ|1|B8|U|1070
8OIQ|1|B8|U|1071
8OIQ|1|B8|A|1072
*
8OIQ|1|B8|U|1143
8OIQ|1|B8|U|1144
8OIQ|1|B8|C|1145
8OIQ|1|B8|G|1146
*
8OIQ|1|B8|C|1158
8OIQ|1|B8|U|1159
8OIQ|1|B8|C|1160
*
8OIQ|1|B8|G|1180
8OIQ|1|B8|A|1181
8OIQ|1|B8|G|1182
*
8OIQ|1|B8|C|1251
8OIQ|1|B8|G|1252
8OIQ|1|B8|G|1253
8OIQ|1|B8|A|1254
8OIQ|1|B8|A|1255
8OIQ|1|B8|C|1256
8OIQ|1|B8|A|1257
8OIQ|1|B8|A|1258
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BL
- Mitochondrial ribosomal protein L2
- Chain BT
- 39S ribosomal protein L15, mitochondrial
Coloring options: